Global evolution of SARS-CoV-2 and dynamic monitoring & prediction of COVID-19

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Global Distribution of SARS-CoV-2 Lineage

Country/territory-wise SARS-CoV-2 lineage distributions of 13,627,121 genomes from GISAID (up to June 22, 2024) based on the combinations of bases at 206 marker sites and variants of concern (VOCs) defining mutation sites. In total 15,268,436 genomes were retrieved from GISAID (as of June 22, 2024), 13,627,121 genomes were used in the analysis after quality control. Criteria for quality control : 1) Ns < 5%; 2) length > 29,000 after removing Ns.

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Development and prediction of global COVID-19 pandemic

Estimation of the reproduction number (R) and prediction of the infected population of SARS-CoV-2 for each country by fitting a Susceptible, Un-quanrantined infected, Quarantined infected, Confirmed infected (SUQC) model.

Estimation of the global reproduction number (R) of SARS-CoV-2 Card world
Prediction of the infected population of SARS-CoV-2 Card world
Lineage Classification Tool

A tool for assigning SARS-CoV-2 genomes into defined lineages based on the combinations of bases at 206 marker sites and variants of concern (VOCs) defining mutation sites.

Input your FASTA sequences Card tool
Surveillance of global dynamics of COVID-19 pandemic

Summary of global dynamics of COVID-19 pandemic, including the cumulative confirmed cases, daily confirmed cases, active confirmed cases, deaths, and matality for each country.

Cumulative confirmed cases Card world
Active confirmed cases Card world
Cumulative confirmed cases in last 7 days Card world
Daily confirmed cases Card world
Variations in SARS-CoV-2

Visualizing variant sites (29,893 in total, degenerate bases excluded) in 13,627,121 SARS-CoV-2 genomes from GISAID (up to June 22, 2024). Quality control: 1) Ns < 5%; 2) length > 29,000 after removing Ns.

Mutation statistics
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Publications